##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane3_Index16_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	18983132	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.10559948695505	33.0	31.0	34.0	30.0	34.0
2	32.37468137502284	34.0	31.0	34.0	31.0	34.0
3	32.409292102061976	34.0	31.0	34.0	31.0	34.0
4	36.058170801319825	37.0	35.0	37.0	35.0	37.0
5	35.94797923756733	37.0	35.0	37.0	35.0	37.0
6	35.938413798102445	37.0	35.0	37.0	35.0	37.0
7	35.914813003460125	37.0	35.0	37.0	35.0	37.0
8	35.8667312643667	37.0	35.0	37.0	35.0	37.0
9	37.595200992122905	39.0	37.0	39.0	35.0	39.0
10-14	37.827274087331844	39.2	37.2	39.4	35.0	39.4
15-19	38.776902915704326	40.0	38.0	41.0	34.8	41.0
20-24	38.60787878417534	40.0	38.0	41.0	34.0	41.0
25-29	38.26817628408211	40.0	38.0	41.0	33.6	41.0
30-34	38.21102794839123	40.0	38.0	41.0	33.4	41.0
35-39	37.90577240889438	40.0	37.0	41.0	33.0	41.0
40-44	37.817547620698214	40.0	37.0	41.0	33.0	41.0
45-49	37.48626249872782	39.4	35.8	41.0	32.0	41.0
50-54	36.92069148547247	39.0	35.0	40.6	31.0	41.0
55-59	36.233459979101454	37.8	34.8	40.0	30.2	41.0
60-64	35.46579491729816	36.6	34.0	39.8	29.2	41.0
65-69	34.54348024340768	35.4	33.4	39.0	28.2	40.6
70-74	33.541259998613505	35.0	32.6	37.4	26.4	39.6
75-79	32.536206048612	34.8	31.8	36.0	26.0	38.8
80-84	31.906767123570546	34.6	31.8	35.2	25.2	37.0
85-89	30.7924741923514	34.0	31.0	35.0	21.6	36.0
90	29.820484786177538	34.0	31.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
11	6.0
12	102.0
13	806.0
14	3699.0
15	10135.0
16	18007.0
17	25249.0
18	32558.0
19	39471.0
20	47601.0
21	56401.0
22	65717.0
23	77699.0
24	94664.0
25	118695.0
26	152230.0
27	196718.0
28	254430.0
29	324708.0
30	409030.0
31	514914.0
32	646285.0
33	835698.0
34	1127387.0
35	1627710.0
36	2497649.0
37	3637158.0
38	4053194.0
39	2082584.0
40	32627.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	26.073532430690317	12.885958457695262	10.13145967463287	50.909049436981554
2	22.110850833255544	19.29422394576406	35.568672229640505	23.02625299133989
3	25.560671442415302	21.635017867441476	22.856576038137437	29.947734652005792
4	27.74374639548416	27.876590649003546	19.46985355209035	24.909809403421942
5	29.318138777539936	29.89458263303994	21.417143603670947	19.370134985749175
6	24.107755242917765	32.86572521331043	21.87719602855841	21.1493235152134
7	21.493497490298232	18.792436358763137	37.526784305139955	22.187281845798683
8	21.588155210636476	22.036458472711455	29.25455082965235	27.120835486999724
9	21.633642962604906	20.94658036408323	31.65898546140858	25.760791211903282
10-14	24.6748681935099	26.254692850473777	24.612123015316968	24.458315940699354
15-19	25.086974056757338	25.116700447534157	25.021988995282758	24.774336500425747
20-24	24.847672918705076	25.355411067744072	25.357921717804683	24.43899429574617
25-29	24.76238198801811	25.36861442780718	25.28502856654483	24.58397501762988
30-34	24.805141301872343	25.280483074506492	25.22464163961183	24.689733984009337
35-39	24.825842605828583	25.416849004181664	25.176294133115423	24.58101425687433
40-44	24.769653073762612	25.244616925153295	25.34179958473234	24.643930416351758
45-49	24.709486906563274	25.30392744416645	25.275670070103363	24.71091557916691
50-54	24.7597786833447	25.378558978526584	25.29215681737245	24.569505520756266
55-59	24.785690680533406	25.302042686060005	25.240247925833394	24.672018707573194
60-64	24.68784173468722	25.3242769322689	25.35161070279787	24.636270630246013
65-69	24.71600963194034	25.417688826334974	25.34218795031852	24.524113591406163
70-74	24.766957995929005	25.363156787173107	25.255772014502657	24.614113202395227
75-79	24.765953356220574	25.324203231026065	25.31924402081975	24.59059939193361
80-84	24.68235199668252	25.45627771414219	25.340008959553895	24.521361329621396
85-89	24.778961240757152	25.445037267552493	25.23223244224017	24.54376904945018
90	24.51033256549198	25.559181941315344	25.44157726077022	24.48890823242246
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	76.98258186767187
2	45.137103824595435
3	55.50840609442109
4	52.653555798906105
5	48.68827376328911
6	45.257078758131165
7	43.68077933609691
8	48.708990697636196
9	47.394434174508184
10-14	49.13318413420926
15-19	49.86131055718308
20-24	49.28666721445125
25-29	49.34635700564799
30-34	49.494875285881676
35-39	49.40685686270292
40-44	49.41358349011436
45-49	49.420402485730186
50-54	49.329284204100965
55-59	49.4577093881066
60-64	49.32411236493323
65-69	49.24012322334651
70-74	49.381071198324236
75-79	49.356552748154186
80-84	49.20371332630392
85-89	49.32273029020733
90	48.99924079791444
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	1.0
1	0.5
2	1.0
3	3.0
4	4.0
5	4.5
6	4.5
7	9.5
8	17.0
9	33.0
10	47.0
11	60.0
12	110.5
13	184.5
14	285.5
15	521.5
16	980.0
17	1734.0
18	3048.5
19	5598.5
20	7301.0
21	9852.5
22	16593.0
23	26533.0
24	40303.0
25	58816.5
26	82238.0
27	111168.5
28	142788.5
29	176332.0
30	194259.0
31	211736.0
32	248427.5
33	289439.5
34	333644.5
35	375750.5
36	420006.5
37	469991.0
38	512959.5
39	548456.0
40	566411.0
41	578704.5
42	602544.0
43	625871.5
44	640895.0
45	648774.0
46	650654.5
47	646248.0
48	645292.5
49	647747.5
50	649508.0
51	641677.0
52	632667.5
53	622798.0
54	617995.0
55	618130.0
56	607075.5
57	592323.0
58	574242.0
59	550495.5
60	537379.0
61	522587.0
62	492747.5
63	453815.0
64	407247.5
65	362905.5
66	317901.5
67	271665.5
68	227618.5
69	185474.5
70	164486.0
71	146026.5
72	112946.0
73	85377.5
74	61275.0
75	41637.5
76	27301.0
77	16771.5
78	9315.0
79	4748.5
80	2963.0
81	2179.0
82	1016.0
83	459.0
84	192.5
85	73.5
86	30.5
87	17.0
88	12.0
89	6.5
90	5.0
91	6.0
92	5.0
93	1.5
94	0.5
95	0.5
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.23066794246597452
2	0.0
3	0.0
4	0.0
5	8.955318858869021E-5
6	0.0
7	0.0
8	0.0
9	0.0
10-14	0.0
15-19	0.0
20-24	3.160700773718478E-6
25-29	9.060675551326304E-5
30-34	0.0023894897849311694
35-39	0.004924371805453388
40-44	0.007114737441640294
45-49	0.0025095964143324718
50-54	0.016073217001283033
55-59	0.00324709326153345
60-64	1.1062452708014672E-4
65-69	2.1598121953742932E-4
70-74	0.0038908226524474467
75-79	0.0014254760489470337
80-84	2.3178472340602173E-4
85-89	5.468012338532967E-4
90	2.3178472340602173E-4
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	1.8983132E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	53.65666340264577
#Duplication Level	Relative count
1	100.0
2	31.695115383021918
3	16.212661059783734
4	10.084103243982268
5	6.711687450801674
6	4.850437088287691
7	3.702821394539504
8	2.943613539379376
9	2.47234536189253
10++	28.478062725276548
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
GAAGA	4041660	2.5432086	5.1459446	2
CTTCT	4115515	2.5325112	5.500462	1
AAGAA	4090900	2.531426	5.165812	2
CCAGG	3916950	2.5242867	5.0723014	1
CCTGG	3932210	2.5234232	5.857625	1
CTGGA	3793675	2.4056323	8.482954	1
TCCAG	3687265	2.3269224	5.217822	2
CTCCT	3650510	2.2829812	7.011564	1
CTGGG	3472775	2.239348	8.065467	1
CAGGA	3454105	2.1995912	5.371905	1
CTTCA	3550390	2.19402	5.643893	1
CTCCA	3436645	2.1583445	7.342808	1
CCCAG	3345500	2.1456566	6.853945	1
CAGAA	3337080	2.0897644	5.145829	1
CTCTG	3209735	2.0170166	6.263551	1
CTGGC	2916870	1.8718476	5.1089673	1
TGGAA	2944195	1.844809	5.1468506	2
CTGAA	2950390	1.8398091	5.530174	1
CTCAG	2740640	1.7295358	6.0654593	1
CTTTG	2755270	1.7036597	5.110244	1
CTTGG	2591675	1.636486	5.265142	1
>>END_MODULE
